Suffix Arrays for Spaced-SNP Databases

Published 1 Jul 2014 in cs.DS | (1407.0114v1)

Abstract: Single-nucleotide polymorphisms (SNPs) account for most variations between human genomes. We show how, if the genomes in a database differ only by a reasonable number of SNPs and the substrings between those SNPs are unique, then we can store a fast compressed suffix array for that database.

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Authors (1)

Travis Gagie

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