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Inferring an Indeterminate String from a Prefix Graph

Published 27 Feb 2015 in cs.DS | (1502.07870v1)

Abstract: An \itbf{indeterminate string} (or, more simply, just a \itbf{string}) $\s{x} = \s{x}[1..n]$ on an alphabet $\Sigma$ is a sequence of nonempty subsets of $\Sigma$. We say that $\s{x}[i_1]$ and $\s{x}[i_2]$ \itbf{match} (written $\s{x}[i_1] \match \s{x}[i_2]$) if and only if $\s{x}[i_1] \cap \s{x}[i_2] \ne \emptyset$. A \itbf{feasible array} is an array $\s{y} = \s{y}[1..n]$ of integers such that $\s{y}[1] = n$ and for every $i \in 2..n$, $\s{y}[i] \in 0..n- i+ 1$. A \itbf{prefix table} of a string $\s{x}$ is an array $\s{\pi} = \s{\pi}[1..n]$ of integers such that, for every $i \in 1..n$, $\s{\pi}[i] = j$ if and only if $\s{x}[i..i+ j- 1]$ is the longest substring at position $i$ of \s{x} that matches a prefix of \s{x}. It is known from \cite{CRSW13} that every feasible array is a prefix table of some indetermintate string. A \itbf{prefix graph} $\mathcal{P} = \mathcal{P}{\s{y}}$ is a labelled simple graph whose structure is determined by a feasible array \s{y}. In this paper we show, given a feasible array \s{y}, how to use $\mathcal{P}{\s{y}}$ to construct a lexicographically least indeterminate string on a minimum alphabet whose prefix table $\s{\pi} = \s{y}$.

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