Algebraic Systems for DNA Origami Motivated from Temperley-Lieb Algebras

Abstract: We initiate an algebraic approach to study DNA origami structures by associating an element from a monoid to each structure. We identify two types of basic building blocks and describe an DNA origami structure with their composition. These building blocks are taken as generators of a monoid, called origami monoid, and, motivated by the well studied Temperley-Lieb algebras, we identify a set of relations that characterize the origami monoid. We also present several observations about the Green's relations for the origami monoid and study the relations to a cross product of Jones monoids that is a morphic image of an origami monoid.