Dependence correction of multiple tests with applications to sparsity

Abstract: The present paper establishes new multiple procedures for simultaneous testing of a large number of hypotheses under dependence. Special attention is devoted to experiments with rare false hypotheses. This sparsity assumption is typically for various genome studies when a portion of remarkable genes should be detected. The aim is to derive tests which control the false discovery rate (FDR) always at finite sample size. The procedures are compared for the set up of dependent and independent $p$-values. It turns out that the FDR bounds differ by a dependency factor which can be used as a correction quantity. We offer sparsity modifications and improved dependence tests which generalize the Benjamini-Yekutieli test and adaptive tests in the sense of Storey. As a byproduct, an early stopped test is presented in order to bound the number of rejections. The new procedures perform well for real genome data examples.