GPU-accelerating ImageJ Macro image processing workflows using CLIJ

Abstract: This chapter introduces GPU-accelerated image processing in ImageJ/FIJI. The reader is expected to have some pre-existing knowledge of ImageJ Macro programming. Core concepts such as variables, for-loops, and functions are essential. The chapter provides basic guidelines for improved performance in typical image processing workflows. We present in a step-by-step tutorial how to translate a pre-existing ImageJ macro into a GPU-accelerated macro.