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Simulating 3-symbol Turing machines with SIMD||DNA

Published 18 May 2021 in cs.ET and q-bio.MN | (2105.08559v5)

Abstract: SIMD||DNA is a model of DNA strand displacement allowing parallel in-memory computation on DNA storage. We show how to simulate an arbitrary 3-symbol space-bounded Turing machine with a SIMD||DNA program, giving a more direct and efficient route to general-purpose information manipulation on DNA storage than the Rule 110 simulation of [Wang, Chalk, Soloveichik, DNA 2019]. We also develop software that can simulate SIMD||DNA programs and produce SVG figures.

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Authors (2)

  1. David Doty 
  2. Aaron Ong 

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