Facilitating automated conversion of scientific knowledge into scientific simulation models with the Machine Assisted Generation, Calibration, and Comparison (MAGCC) Framework

Abstract: The Machine Assisted Generation, Comparison, and Calibration (MAGCC) framework provides machine assistance and automation of recurrent crucial steps and processes in the development, implementation, testing, and use of scientific simulation models. MAGCC bridges systems for knowledge extraction via natural language processing or extracted from existing mathematical models and provides a comprehensive workflow encompassing the composition of scientific models and AI assisted code generation. MAGCC accomplishes this through: 1) the development of a comprehensively expressive formal knowledge representation knowledgebase, the Structured Scientific Knowledge Representation (SSKR) that encompasses all the types of information needed to make any simulation model, 2) the use of an artificially intelligent logic reasoning system, the Computational Modeling Assistant (CMA), that takes information from the SSKR and generates, in a traceable fashion, model specifications across a range of simulation modeling methods, and 3) the use of the CMA to generate executable code for a simulation model from those model specifications. The MAGCC framework can be customized any scientific domain, and future work will integrate newly developed code-generating AI systems.