Block Sparse Flash Attention

Abstract: Modern LLMs increasingly require long contexts for reasoning and multi-document tasks, but attention's quadratic complexity creates a severe computational bottleneck. We present Block-Sparse FlashAttention (BSFA), a drop-in replacement that accelerates long-context inference while preserving model quality. Unlike methods that predict importance before computing scores, BSFA computes exact query-key similarities to select the top-k most important value blocks for each query. By comparing per-block maximum scores against calibrated thresholds, we skip approximately 50% of the computation and memory transfers for pruned blocks. Our training-free approach requires only a one-time threshold calibration on a small dataset to learn the per-layer and per-head attention score distributions. We provide a CUDA kernel implementation that can be used as a drop-in replacement for FlashAttention. On Llama-3.1-8B, BSFA achieves up to 1.10x speedup on real-world reasoning benchmarks and up to 1.24x for needle-in-a-haystack retrieval tasks while maintaining above 99% baseline accuracy, with certain configurations even improving accuracy by focusing on the most relevant content, substantially outperforming existing sparse attention methods. The implementation is available at https://github.com/Danielohayon/Block-Sparse-Flash-Attention