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Mitigating mode collapse in normalizing flows by annealing with an adaptive schedule: Application to parameter estimation

Published 6 May 2025 in cs.LG, physics.comp-ph, physics.data-an, q-bio.QM, and stat.ML | (2505.03652v1)

Abstract: Normalizing flows (NFs) provide uncorrelated samples from complex distributions, making them an appealing tool for parameter estimation. However, the practical utility of NFs remains limited by their tendency to collapse to a single mode of a multimodal distribution. In this study, we show that annealing with an adaptive schedule based on the effective sample size (ESS) can mitigate mode collapse. We demonstrate that our approach can converge the marginal likelihood for a biochemical oscillator model fit to time-series data in ten-fold less computation time than a widely used ensemble Markov chain Monte Carlo (MCMC) method. We show that the ESS can also be used to reduce variance by pruning the samples. We expect these developments to be of general use for sampling with NFs and discuss potential opportunities for further improvements.

Summary

Mitigating Mode Collapse in Normalizing Flows with Adaptive Annealing for Parameter Estimation

This paper investigates methods to enhance the effectiveness of normalizing flows (NFs) in sampling from multimodal distributions for parameter estimation, particularly addressing the issue of mode collapse. Normalizing flows are a class of generative models that transform simple base distributions into complex target distributions through a sequence of invertible and differentiable transformations. Despite their theoretical appeal due to an exact computation of the probability density, NFs struggle with mode collapse where they tend to focus on a single mode when the target distribution is multimodal, thus limiting their practical utility.

Primary Contribution and Methodology

The authors propose a novel adaptive annealing strategy to mitigate mode collapse in NFs, leveraging the effective sample size (ESS) as a metric to dynamically adjust the annealing process. The annealing extends between the base distribution and the target posterior distribution under a Bayesian framework. This adaptive control allows the annealing schedule to be inherently tailored to the specific data and NF architecture, optimizing the sampling process by balancing computational efficiency and sampling accuracy.

The focal point of the study is a biochemical oscillator modeled by ordinary differential equations (ODEs), serving as the test case for this approach. The model's parameters are estimated using time-series data, forming a fitting challenge due to correlated parameters and computationally costly likelihood evaluations. The authors demonstrate that adaptive annealing achieves a ten-fold reduction in computation time compared to a conventional ensemble MCMC method, without sacrificing the capture of the distribution’s modes.

Results and Analysis

Strong numerical results underscore the effectiveness of the proposed method:

  • Mode Capture: NFs with adaptive annealing robustly learn the multiple modes present in the parameter space, something traditional non-adaptive NF training schemes fail at.
  • Efficiency: The approach achieves substantial computational speedups while maintaining similarity in marginal likelihood estimates with other methods like thermodynamic integration (TI).
  • ESS Threshold: The study emphasizes the role of ESS in stabilizing the annealing process, highlighting that setting an appropriate ESS threshold can significantly affect efficiency and convergence.

Beyond the immediate algorithmic innovation, the study provides insights into the practical and theoretical implications of NF-based sampling approaches. Practically, the method's ability to use existing samples from various stages of annealing as mixtures for training exemplifies an efficient re-utilization that reduces variance and augments convergence. Theoretically, it demonstrates how the choice of divergence during training, specifically using forward KL divergence, can influence the sampling behavior toward more mode-covering outcomes.

Future Directions

The adaptive strategy proposed opens avenues for further refinement and application expansion in the field of Bayesian parameter estimation with NFs. Potential areas for exploration include:

  • Higher Dimensional Spaces: Given the observed sensitivity to dimensionality in importance sampling, future work could investigate adaptive approaches in more complex systems.
  • Architectural Enhancements: Testing alternative NF architectures and transport mechanisms may enhance robustness and efficiency.
  • Combination with Other Techniques: Integrating additional strategies for mitigating mode collapse, such as variational divergence minimization, may yield further improvements.

Overall, the paper contributes significantly by advancing the utility of NFs in parameter estimation, especially for applications characterized by complex multimodal distributions and computationally intensive likelihoods. It suggests promising directions for research in optimizing such stochastic models, potentially influencing developments in machine learning-driven inference and scientific computing.

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