Papers
Topics
Authors
Recent
Search
2000 character limit reached

A Tournament of Transformation Models: B-Spline-based vs. Mesh-based Multi-Objective Deformable Image Registration

Published 30 Jan 2024 in cs.CV, cs.AI, and cs.NE | (2401.16867v1)

Abstract: The transformation model is an essential component of any deformable image registration approach. It provides a representation of physical deformations between images, thereby defining the range and realism of registrations that can be found. Two types of transformation models have emerged as popular choices: B-spline models and mesh models. Although both models have been investigated in detail, a direct comparison has not yet been made, since the models are optimized using very different optimization methods in practice. B-spline models are predominantly optimized using gradient-descent methods, while mesh models are typically optimized using finite-element method solvers or evolutionary algorithms. Multi-objective optimization methods, which aim to find a diverse set of high-quality trade-off registrations, are increasingly acknowledged to be important in deformable image registration. Since these methods search for a diverse set of registrations, they can provide a more complete picture of the capabilities of different transformation models, making them suitable for a comparison of models. In this work, we conduct the first direct comparison between B-spline and mesh transformation models, by optimizing both models with the same state-of-the-art multi-objective optimization method, the Multi-Objective Real-Valued Gene-pool Optimal Mixing Evolutionary Algorithm (MO-RV-GOMEA). The combination with B-spline transformation models, moreover, is novel. We experimentally compare both models on two different registration problems that are both based on pelvic CT scans of cervical cancer patients, featuring large deformations. Our results, on three cervical cancer patients, indicate that the choice of transformation model can have a profound impact on the diversity and quality of achieved registration outcomes.

Definition Search Book Streamline Icon: https://streamlinehq.com
References (19)
  1. D. Rueckert and J. A. Schnabel, “Medical Image Registration,” in Biomedical Image Processing, Biological and Medical Physics, Biomedical Engineering, ch. 5, pp. 131–154, Springer Berlin Heidelberg, 2011.
  2. C. T. Metz, S. Klein, M. Schaap, T. van Walsum, and W. J. Niessen, “Nonrigid registration of dynamic medical imaging data using nD+t B-splines and a groupwise optimization approach,” Medical Image Analysis 15(2), pp. 238–249, 2011.
  3. D. Rueckert, L. I. Sonoda, C. Hayes, D. L. G. Hill, M. O. Leach, and D. J. Hawkes, “Nonrigid Registration Using Free-Form Deformations: Application to Breast MR Images,” IEEE Transactions on Medical Imaging 18(8), pp. 712–721, 1999.
  4. K. K. Brock, M. B. Sharpe, L. A. Dawson, S. M. Kim, and D. A. Jaffray, “Accuracy of finite element model-based multi-organ deformable image registration,” Medical Physics 32(6), pp. 1647–1659, 2005.
  5. B. Rigaud, A. Klopp, S. Vedam, A. Venkatesan, N. Taku, A. Simon, P. Haigron, R. De Crevoisier, K. K. Brock, and G. Cazoulat, “Deformable image registration for dose mapping between external beam radiotherapy and brachytherapy images of cervical cancer,” Physics in Medicine and Biology 64(11), p. 115023, 2019.
  6. S. Klein, M. Staring, K. Murphy, M. A. Viergever, and J. P. Pluim, “Elastix: A toolbox for intensity-based medical image registration,” IEEE Transactions on Medical Imaging 29(1), pp. 196–205, 2010.
  7. G. C. Sharp, R. Li, J. Wolfgang, G. T. Y. Chen, M. Peroni, M. F. Spadea, S. Mori, J. Zhang, J. Shackleford, and N. Kandasamy, “Plastimatch - an open source software suite for radiotherapy image processing,” in Proceedings of the XVI’th International Conference on the use of Computers in Radiotherapy, pp. 1–4, 2010.
  8. G. Andreadis, P. A. N. Bosman, and T. Alderliesten, “MOREA: a GPU-accelerated Evolutionary Algorithm for Multi-Objective Deformable Registration of 3D Medical Images,” in Proceedings of the 2023 Genetic and Evolutionary Computation Conference, pp. 1294–1302, 2023.
  9. W. Sun, W. J. Niessen, M. Van Stralen, and S. Klein, “Simultaneous multiresolution strategies for nonrigid image registration,” IEEE Transactions on Image Processing 22(12), pp. 4905–4917, 2013.
  10. K. Murphy, B. van Ginneken, J. M. Reinhardt, S. Kabus, K. Ding, X. Deng, K. Cao, K. Du, G. E. Christensen, V. Garcia, T. Vercauteren, N. Ayache, O. Commowick, G. Malandain, B. Glocker, N. Paragios, N. Navab, V. Gorbunova, J. Sporring, M. De Bruijne, X. Han, M. P. Heinrich, J. A. Schnabel, M. Jenkinson, C. Lorenz, M. Modat, J. R. McClelland, S. Ourselin, S. E. Muenzing, M. A. Viergever, D. De Nigris, D. L. Collins, T. Arbel, M. Peroni, R. Li, G. C. Sharp, A. Schmidt-Richberg, J. Ehrhardt, R. Werner, D. Smeets, D. Loeckx, G. Song, N. Tustison, B. Avants, J. C. Gee, M. Staring, S. Klein, B. C. Stoel, M. Urschler, M. Werlberger, J. Vandemeulebroucke, S. Rit, D. Sarrut, and J. P. W. Pluim, “Evaluation of registration methods on thoracic CT: The EMPIRE10 challenge,” IEEE Transactions on Medical Imaging 30(11), pp. 1901–1920, 2011.
  11. G. Loi, M. Fusella, E. Lanzi, E. Cagni, C. Garibaldi, G. Iacoviello, F. Lucio, E. Menghi, R. Miceli, L. C. Orlandini, A. Roggio, F. Rosica, M. Stasi, L. Strigari, S. Strolin, and C. Fiandra, “Performance of commercially available deformable image registration platforms for contour propagation using patient-based computational phantoms: A multi-institutional study,” Medical Physics 45(2), pp. 748–757, 2018.
  12. K. Pirpinia, P. A. N. Bosman, C. E. Loo, G. Winter-Warnars, N. N. Y. Janssen, A. N. Scholten, J. J. Sonke, M. van Herk, and T. Alderliesten, “The feasibility of manual parameter tuning for deformable breast MR image registration from a multi-objective optimization perspective,” Physics in Medicine and Biology 62(14), pp. 5723–5743, 2017.
  13. L. G. Brown, “A Survey of Image Registration Techniques,” ACM Computing Surveys 24(4), pp. 325–376, 1992.
  14. T. Alderliesten, J. J. Sonke, and P. A. N. Bosman, “Deformable image registration by multi-objective optimization using a dual-dynamic transformation model to account for large anatomical differences,” in SPIE Medical Imaging 2013: Image Processing, 8669, p. 866910, 2013.
  15. G. Andreadis, P. A. N. Bosman, and T. Alderliesten, “Multi-objective dual simplex-mesh based deformable image registration for 3D medical images - proof of concept,” in SPIE Medical Imaging 2022: Image Processing, pp. 744–750, 2022.
  16. A. Bouter, N. H. Luong, C. Witteveen, T. Alderliesten, and P. A. N. Bosman, “The multi-objective real-valued gene-pool optimal mixing evolutionary algorithm,” in Proceedings of the 2017 Genetic and Evolutionary Computation Conference, pp. 537–544, 2017.
  17. E. Zitzler, J. Knowles, and L. Thiele, “Quality Assessment of Pareto Set Approximations,” in Multiobjective Optimization, pp. 373–404, Springer Berlin Heidelberg, 2008.
  18. G. K. Rohde, A. Aldroubi, and B. M. Dawant, “The adaptive bases algorithm for intensity-based nonrigid image registration,” IEEE Transactions on Medical Imaging 22, pp. 1470–1479, 11 2003.
  19. A. Pai, S. Sommer, L. Sørensen, S. Darkner, J. Sporring, and M. Nielsen, “Image Registration using stationary velocity fields parameterized by norm-minimizing Wendland kernel,” in SPIE Medical Imaging 2015: Image Processing, pp. 838–844, 2015.

Summary

  • The paper demonstrates that comparing B-spline and mesh models via MO-RV-GOMEA improves understanding of deformable image registration outcomes.
  • It shows that mesh models yield more localized and precise deformations compared to B-spline models, especially in complex anatomical regions.
  • The study highlights that multi-objective optimization enhances registration diversity and quality, promising better clinical decision-making.

Detailed Summary of "A Tournament of Transformation Models: B-Spline-based vs. Mesh-based Multi-Objective Deformable Image Registration"

This paper investigates the two predominant transformation models used in deformable image registration (DIR) — B-spline models and mesh models — in the context of multi-objective optimization. It provides the first direct comparison by applying the Multi-Objective Real-Valued Gene-pool Optimal Mixing Evolutionary Algorithm (MO-RV-GOMEA) to both transformation types. This study is vital in understanding how the choice of transformation model affects the diversity and quality of registration outcomes.

Transformation Models and Optimization Strategy

B-Spline and Mesh Models

B-spline models represent deformations through a grid of control points, offering smooth deformable mappings but with limitations in large deformations. Mesh models, on the other hand, utilize tetrahedral meshes that can handle complex physical deformations by representing local geometry and ensuring fold-free transformations. The choice between them impacts the registration’s ability to model realistic deformations. Figure 1

Figure 1

Figure 1

Figure 1

Figure 1: 2D illustration of how the B-spline and mesh transformation models decompose the image domain and allow for local objective re-evaluations.

Multi-Objective Optimization with MO-RV-GOMEA

Both transformation models were optimized using MO-RV-GOMEA, which excels in leveraging partial evaluations that enhance optimization efficiency and reduce computational costs. Here, the novel integration of MO-RV-GOMEA with the B-spline model was achieved by decomposing the image domain into localized regions, allowing simultaneous partial optimizations. Figure 2

Figure 2

Figure 2

Figure 2: Optimization loops of the three registration approaches compared in this work.

Experimentation and Results

Experiment Setup

The experiments focused on CT scans from three cervical cancer patients, evaluating two registration problems per patient: a simple bladder isolation and a multi-organ registration including bones, sigmoid, and rectum. The quality and diversity of registrations were assessed based on image similarity and deformation magnitude objectives, using a post-hoc voxel-based deformation metric for consistency.

Comparative Findings

Results show that direct optimization using MO-RV-GOMEA leads to superior performance compared to traditional gradient-descent approaches, particularly in delivering diverse registration options. In all cases, the mesh-based model demonstrated more localized and precise deformations compared to the broader adjustments observed with the B-spline model. These differences are noticeable in the registration of complex anatomical areas where the mesh model adhered closely to real anatomical displacement. Figure 3

Figure 3

Figure 3

Figure 3

Figure 3: Sagittal slices of the source and target images for Patient 1.

Figure 4

Figure 4

Figure 4: Comparison of registrations found by the three approaches for Patient 1.

Figure 5

Figure 5

Figure 5: Comparison of registrations for Patient 2.

Figure 6

Figure 6

Figure 6: Comparison of registrations for Patient 3.

Practical and Theoretical Implications

This research highlights the critical role of selecting appropriate transformation models in medical image registration, suggesting that mesh models may offer superior lineage for problems with complex deformations. The employment of multi-objective optimization techniques like MO-RV-GOMEA is shown to enhance outcome diversity and quality, especially valuable in clinical contexts where bespoke solutions may be required.

Conclusion

This paper successfully bridges a gap in direct comparative studies of DIR transformation models by leveraging MO-RV-GOMEA across different model types. Future work might explore resolutions and multi-modal scenarios, potentially extending these methods to openly validate alternative transformation models and objectives under various practical constraints. Such advancements promise to enhance clinical decision-making and therapeutic precision, tailoring image registration solutions to patient-specific anatomical intricacies.

Paper to Video (Beta)

No one has generated a video about this paper yet.

Whiteboard

No one has generated a whiteboard explanation for this paper yet.

Open Problems

We haven't generated a list of open problems mentioned in this paper yet.

Collections

Sign up for free to add this paper to one or more collections.